provis
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Provis
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provis
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Index
A
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C
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D
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F
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G
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I
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M
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N
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O
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P
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R
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S
A
add_protein() (provis.src.plotting.plotter.Plotter method)
add_residue() (provis.src.processing.residue.Residue method)
assign_props_to_new_mesh() (in module provis.utils.surface_feat)
C
cleanup() (provis.src.processing.file_converter.FileConverter method)
compute_angle_deviation() (in module provis.utils.charges_utils)
compute_angle_penalty() (in module provis.utils.charges_utils)
compute_charges() (in module provis.utils.surface_feat)
compute_hbond_helper() (in module provis.utils.charges_utils)
compute_hbonds() (in module provis.utils.surface_feat)
compute_hydrophobicity() (in module provis.utils.surface_feat)
compute_normal() (in module provis.utils.surface_utils)
compute_plane_deviation() (in module provis.utils.charges_utils)
compute_satisfied_CO_HN() (in module provis.utils.charges_utils)
compute_shape_index() (in module provis.utils.surface_feat)
compute_surface_features() (in module provis.utils.surface_feat)
crossp() (in module provis.utils.surface_utils)
D
DataHandler (class in provis.src.processing.data_handler)
decompose_traj() (provis.src.processing.file_converter.FileConverter method)
DynamicPlotter (class in provis.src.plotting.dynamic_plotter)
F
FileConverter (class in provis.src.processing.file_converter)
find_nearest_atom() (in module provis.utils.surface_utils)
fix_trimesh() (in module provis.utils.surface_utils)
G
get_assignments() (provis.src.processing.surface_handler.SurfaceHandler method)
get_atom_mesh() (provis.src.processing.data_handler.DataHandler method)
get_atom_trimesh() (provis.src.processing.data_handler.DataHandler method)
get_atoms() (provis.src.processing.data_handler.DataHandler method)
get_atoms_IDs() (provis.src.processing.data_handler.DataHandler method)
get_backbone_mesh() (provis.src.processing.data_handler.DataHandler method)
get_bond_mesh() (provis.src.processing.data_handler.DataHandler method)
get_res_info() (provis.src.processing.residue.Residue method)
get_residue_info() (provis.src.processing.data_handler.DataHandler method)
get_residue_mesh() (provis.src.processing.data_handler.DataHandler method)
get_residues() (in module provis.src.processing)
(in module provis.utils)
(provis.src.processing.data_handler.DataHandler method)
get_structure() (provis.src.processing.data_handler.DataHandler method)
get_surface() (in module provis.utils.surface_utils)
get_surface_features() (provis.src.processing.surface_handler.SurfaceHandler method)
I
import_atm_mass_info() (in module provis.utils.atminfo)
import_atm_size_info() (in module provis.utils.atminfo)
import_res_size_info() (in module provis.utils.atminfo)
is_acceptor_atom() (in module provis.utils.charges_utils)
is_polar_hydrogen() (in module provis.utils.charges_utils)
M
manual_plot() (provis.src.plotting.plotter.Plotter method)
(provis.src.plotting.structure.Structure method)
module
provis
provis.src
provis.src.plotting
provis.src.plotting.dynamic_plotter
provis.src.plotting.plotter
provis.src.plotting.structure
provis.src.plotting.surface
provis.src.processing
provis.src.processing.data_handler
provis.src.processing.file_converter
provis.src.processing.name_checker
provis.src.processing.protein
provis.src.processing.residue
provis.src.processing.surface_handler
provis.utils
provis.utils.atminfo
provis.utils.charges_utils
provis.utils.surface_feat
provis.utils.surface_utils
msms() (provis.src.processing.file_converter.FileConverter method)
msms_mesh_and_color() (provis.src.processing.surface_handler.SurfaceHandler method)
N
NameChecker (class in provis.src.processing.name_checker)
native_mesh_and_color() (provis.src.processing.surface_handler.SurfaceHandler method)
normalize_electrostatics() (in module provis.utils.charges_utils)
O
output_pdb_as_xyzrn() (in module provis.utils.surface_utils)
P
pdb_to_mol2() (provis.src.processing.file_converter.FileConverter method)
pdb_to_pqr() (provis.src.processing.file_converter.FileConverter method)
pdb_to_xyzrn() (provis.src.processing.file_converter.FileConverter method)
plot() (provis.src.plotting.structure.Structure method)
(provis.src.plotting.surface.Surface method)
plot_atoms() (provis.src.plotting.dynamic_plotter.DynamicPlotter method)
(provis.src.plotting.plotter.Plotter method)
(provis.src.plotting.structure.Structure method)
plot_backbone() (provis.src.plotting.dynamic_plotter.DynamicPlotter method)
(provis.src.plotting.plotter.Plotter method)
(provis.src.plotting.structure.Structure method)
plot_bonds() (provis.src.plotting.dynamic_plotter.DynamicPlotter method)
(provis.src.plotting.plotter.Plotter method)
(provis.src.plotting.structure.Structure method)
plot_charge() (provis.src.plotting.dynamic_plotter.DynamicPlotter method)
(provis.src.plotting.plotter.Plotter method)
(provis.src.plotting.surface.Surface method)
plot_hydrophob() (provis.src.plotting.dynamic_plotter.DynamicPlotter method)
(provis.src.plotting.plotter.Plotter method)
(provis.src.plotting.surface.Surface method)
plot_residues() (provis.src.plotting.dynamic_plotter.DynamicPlotter method)
(provis.src.plotting.plotter.Plotter method)
(provis.src.plotting.structure.Structure method)
plot_shape() (provis.src.plotting.dynamic_plotter.DynamicPlotter method)
(provis.src.plotting.plotter.Plotter method)
(provis.src.plotting.surface.Surface method)
plot_stick_point() (provis.src.plotting.dynamic_plotter.DynamicPlotter method)
(provis.src.plotting.plotter.Plotter method)
(provis.src.plotting.structure.Structure method)
plot_structure() (provis.src.plotting.dynamic_plotter.DynamicPlotter method)
(provis.src.plotting.plotter.Plotter method)
plot_surface() (provis.src.plotting.dynamic_plotter.DynamicPlotter method)
(provis.src.plotting.plotter.Plotter method)
plot_vw() (provis.src.plotting.dynamic_plotter.DynamicPlotter method)
(provis.src.plotting.plotter.Plotter method)
(provis.src.plotting.structure.Structure method)
Plotter (class in provis.src.plotting.plotter)
prepare_trimesh() (in module provis.utils.surface_utils)
Protein (class in provis.src.processing.protein)
provis
module
provis.src
module
provis.src.plotting
module
provis.src.plotting.dynamic_plotter
module
provis.src.plotting.plotter
module
provis.src.plotting.structure
module
provis.src.plotting.surface
module
provis.src.processing
module
provis.src.processing.data_handler
module
provis.src.processing.file_converter
module
provis.src.processing.name_checker
module
provis.src.processing.protein
module
provis.src.processing.residue
module
provis.src.processing.surface_handler
module
provis.utils
module
provis.utils.atminfo
module
provis.utils.charges_utils
module
provis.utils.surface_feat
module
provis.utils.surface_utils
module
R
read_msms() (in module provis.utils.surface_utils)
remove_residue() (provis.src.processing.residue.Residue method)
Residue (class in provis.src.processing.residue)
return_all() (provis.src.processing.name_checker.NameChecker method)
return_mesh_and_color() (provis.src.processing.surface_handler.SurfaceHandler method)
S
str2bool() (in module provis.utils)
Structure (class in provis.src.plotting.structure)
Surface (class in provis.src.plotting.surface)
SurfaceHandler (class in provis.src.processing.surface_handler)
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